List of publications:
(automatically imported from ORCID)
- 2025|
Accuracy of approximate methods for the calculation of fluorescence-type linear spectra with a complex system–bath coupling
J. A. Nöthling, Tomáš Mančal, T. P. J. Krüger
@The Journal of Chemical Physics
DOI: 10.1063/5.0242756
- 2024|
Self-consistent approach to the dynamics of excitation energy transfer in multichromophoric systems
- 2023|
Role of Environmental Dynamic Polarizability in Static Excited State Properties of Embedded Molecular Systems: Application to Disordered Fluorographene Systems
Vladislav Sláma, Frank Müh, Thomas Renger, Tomáš Mančal
@The Journal of Physical Chemistry C
- 2022|
Accuracy of approximate methods for the calculation of absorption-type linear spectra with a complex system–bath coupling
J. A. Nöthling, Tomáš Mančal, T. P. J. Krüger
@The Journal of Chemical Physics
DOI: 10.1063/5.0100977
- 2022|
Fluorographene with impurities as a biomimetic light-harvesting medium
- 2022|
Hidden vibronic and excitonic structure and vibronic coherence transfer in the bacterial reaction center
Veronica R. Policht, Andrew Niedringhaus, Rhiannon Willow, Philip D. Laible, David F. Bocian, Christine Kirmaier, Dewey Holten, Tomáš Mančal, Jennifer P. Ogilvie
@Science Advances
- 2022|
Accuracy of approximate methods for the calculation of absorption-type linear spectra with a complex system-bath coupling
- 2021|
Hidden vibronic and excitonic structure and vibronic coherence transfer in the bacterial reaction center
Policht, V.R., Niedringhaus, A., Willow, R., Laible, P.D., Bocian, D.F., Kirmaier, C., Holten, D., Mančal, T., Ogilvie, J.P.
@arXiv
- 2021|
Modelling of plasmon-enhanced uorescence in a single light-harvesting complex near a gold nanorod
Ugwuoke, L.C., Kyeyune, F., Mancal, T., Kruger, T.P.J.
@Progress in Biomedical Optics and Imaging - Proceedings of SPIE
DOI: 10.1117/12.2583000
- 2021|
Translation of Werner Heisenberg's Paper”Quantum-Theoretical Reinterpretation of Kinematic and Mechanical Relations” Zeitschrift für Physik 33, 1925, 879-893 into Czech language
- 2020|
Exact description of excitonic dynamics in molecular aggregates weakly driven by light
- 2020|
Nonequilibrium steady-state picture of incoherent light-induced excitation harvesting
- 2020|
Plasmonic quantum yield enhancement of a single molecule near a nanoegg
Luke C. Ugwuoke, Tomáš Mančal, Tjaart P. J. Krüger
@Journal of Applied Physics
DOI: 10.1063/5.0007985
- 2020|
Quantum biology revisited
Jianshu Cao, Richard J. Cogdell, David F. Coker, Hong-Guang Duan, Jürgen Hauer, Ulrich Kleinekathöfer, Thomas L. C. Jansen, Tomáš Mančal, R. J. Dwayne Miller, Jennifer P. Ogilvie, Valentyn I. Prokhorenko, Thomas Renger, Howe-Siang Tan, Roel Tempelaar, Michael Thorwart, Erling Thyrhaug, Sebastian Westenhoff, Donatas Zigmantas
@Science Advances
- 2020|
Quantum dissipation driven by electron transfer within a single molecule investigated with atomic force microscopy
Jan Berger, Martin Ondráček, Oleksandr Stetsovych, Pavel Malý, Petr Holý, Jiří Rybáček, Martin Švec, Irena G. Stará, Tomáš Mančal, Ivo Starý, Pavel Jelínek
@Nature Communications
- 2020|
Interpreting Fluorescence Detected Two-Dimensional Electronic Spectroscopy
Oliver Kühn, Tomáš Mančal, Tõnu Pullerits
@The Journal of Physical Chemistry Letters
- 2020|
A decade with quantum coherence: How our past became classical and the future turned quantum
- 2020|
Anharmonic Molecular Motion Drives Resonance Energy Transfer in peri-Arylene Dyads
Sláma, V., Perlík, V., Langhals, H., Walter, A., Mančal, T., Hauer, J., Šanda, F.
@Frontiers in Chemistry
- 2020|
Exact description of excitonic dynamics in molecular aggregates weakly driven by light
- 2020|
Localized Surface Plasmon Resonances of Simple Tunable Plasmonic Nanostructures
- 2020|
Modeling irreversible molecular internal conversion using the time-dependent variational approach with sD2ansatz
Jakučionis, M., Mancal, T., Abramavičius, D.
@Physical Chemistry Chemical Physics
DOI: 10.1039/d0cp01092h
- 2020|
Nonequilibrium steady-state picture of photosynthetic light harvesting
- 2020|
Optical properties of a nanoegg-nanorod heterodimer: A quasi-static analysis
Ugwuoke, L.C., Mančal, T., Krüger, T.P.J.
@Journal of the Optical Society of America B: Optical Physics
DOI: 10.1364/JOSAB.399015
- 2020|
Photosynthetic light harvesting: Insights from multidisciplinary approaches
Gelin, M.F., Abramavicius, D., Duffy, C., Mančal, T.
@Chemical Physics
- 2020|
Plasmonic quantum yield enhancement of a single molecule near a nanoegg
- 2019|
Electron-vibrational coupling decreases trapping by low-energy states in photosynthesis
Malý, P., Novoderezhkin, V.I., van Grondelle, R., Mančal, T.
@Chemical Physics
- 2019|
Energy transfer times in fluorographene-based biomimetic light harvesting antennae
- 2019|
Energy transfer times in fluorographene-based biomimetic light harvesting antennae
- 2019|
Interpreting fluorescence detected 2D electronic spectroscopy
Kühn, O., Mancal, T., Pullerits, T.
@arXiv
- 2019|
Localized surface plasmon resonances of simple tunable plasmonic nanostructures
- 2019|
Modeling non-reversible molecular internal conversion using the time-dependent variational approach with sD2 Ansatz
- 2018|
Signatures of Exciton Delocalization and Exciton–Exciton Annihilation in Fluorescence-Detected Two-Dimensional Coherent Spectroscopy
Pavel Malý, Tomáš Mančal
@The Journal of Physical Chemistry Letters
- 2018|
Fluorographene with impurities as a biomimetic light-harvesting medium
- 2018|
Geometric dependencies of vibronically mediated excitation transfer in rylene dyads
Perlík, V., Sláma, V., Lincoln, C.N., Langhals, H., Riedle, E., Mančal, T., Hauer, J., Šanda, F.
@arXiv
- 2018|
Light harvesting in green bacteria
Pšenčík, J., Mančal, T.
@Light Harvesting in Photosynthesis
- 2018|
Robust light harvesting by a noisy antenna
Pavel Malý, Alastair T. Gardiner, Richard J. Cogdell, Rienk van Grondelle, Tomáš Mančal
@Physical Chemistry Chemical Physics
DOI: 10.1039/C7CP06139K
- 2018|
Role of enviromental dynamic polarizability in static excited state properties of embedded molecular systems: Application to disordered fluorographene systems
- 2018|
Signatures of exciton delocalization and exciton-exciton annihilation in fluorescence-detected two-dimensional coherent spectroscopy
- 2018|
Treatment of Herzberg-Teller and non-Condon effects in optical spectra with Hierarchical Equations of Motion
- 2018|
Treatment of herzberg-teller and non-condon effects in optical spectra with hierarchical equations of motion
- 2017|
Ultrafast energy transfer with competing channels: Non-equilibrium Förster and Modified Redfield theories
- 2017|
How reduced excitonic coupling enhances light harvesting in the main photosynthetic antennae of diatoms
Krüger, T.P.J., Malý, P., Alexandre, M.T.A., Mančal, T., Büchel, C., van Grondelle, R.
@Proceedings of the National Academy of Sciences of the United States of America
- 2017|
Polarization-controlled optimal scatter suppression in transient absorption spectroscopy
Malý, P., Ravensbergen, J., Kennis, J.T.M., van Grondelle, R., Croce, R., Mancal, T., van Oort, B.
@Scientific Reports
DOI: 10.1038/srep43484
- 2017|
Ultrafast energy transfer with competing channels: Non-equilibrium förster and modified redfield theories
- 2016|
Optical spectroscopy and system–bath interactions in molecular aggregates with full configuration interaction Frenkel exciton model
- 2016|
Single Molecule Spectroscopy of Monomeric LHCII: Experiment and Theory
- 2016|
Study of electronic structures and pigment-protein interactions in the reaction center of thermochromatium tepidum with a dynamic environment
Zheng, F., Jin, M., Mančal, T., Zhao, Y.
@Journal of Physical Chemistry B
- 2016|
The Role of Resonant Vibrations in Electronic Energy Transfer
Malý, P., Somsen, O.J.G., Novoderezhkin, V.I., Mančal, T., van Grondelle, R.
@ChemPhysChem
- 2016|
Ultrafast energy relaxation in single light-harvesting complexes
Malý, P., Gruber, J.M., Cogdell, R.J., Mančal, T., van Grondelle, R.
@Proceedings of the National Academy of Sciences of the United States of America
- 2015|
Vibronic coupling explains the ultrafast carotenoid-to-bacteriochlorophyll energy transfer in natural and artificial light harvesters
Václav Perlík, Joachim Seibt, Laura J. Cranston, Richard J. Cogdell, Craig N. Lincoln, Janne Savolainen, František Šanda, Tomáš Mančal, Jürgen Hauer
@The Journal of Chemical Physics
DOI: 10.1063/1.4919548
- 2015|
The Role of exciton delocalization in the major photosynthetic light-harvesting antenna of plants
Ramanan, C., Gruber, J.M., Malý, P., Negretti, M., Novoderezhkin, V., Krüger, T.P.J., Mančal, T., Croce, R., van Grondelle, R.
@Biophysical Journal
- 2014|
Exact stochastic unraveling of an optical coherence dynamics by cumulant expansion
Jan Olšina, Tobias Kramer, Christoph Kreisbeck, Tomáš Mančal
@The Journal of Chemical Physics
DOI: 10.1063/1.4898354
- 2014|
Dynamic coherence in excitonic molecular complexes under various excitation conditions
- 2014|
Principles of multi-dimensional electronic spectroscopy
- 2014|
Transfer of vibrational coherence through incoherent energy transfer process in Förster limit
Mančal, T., Dostál, J., Pšenčík, J., Zigmantas, D.
@Canadian Journal of Chemistry
- 2014|
Unraveling the nature of coherent beatings in chlorosomes
Dostál, J., Mančal, T., Vácha, F., Pšenčík, J., Zigmantas, D.
@Journal of Chemical Physics
DOI: 10.1063/1.4868557
- 2013|
Enhancement of Vibronic and Ground-State Vibrational Coherences in 2D Spectra of Photosynthetic Complexes
Chenu, Aurelia, Christensson, Niklas, Kauffmann, Harald F., Mancal, Tomas
@Scientific Reports
DOI: 10.1038/srep02029
- 2013|
Excitation energy transfer in a classical analogue of photosynthetic antennae
- 2013|
Fast exciton dynamics and coherent oscillations revealed by coherent 2D spectroscopy in chlorosomes
Dostál, J., Mančal, T., Vácha, F., Augulis, R., Pšenčík, J., Zigmantas, D.
@EPJ Web of Conferences
- 2013|
Molecular Excitation Dynamics and Relaxation: Quantum Theory and Spectroscopy
Valkunas, L., Abramavicius, D., Mancal, T.
@Molecular Excitation Dynamics and Relaxation: Quantum Theory and Spectroscopy
- 2013|
Ultrafast charge transfer visualized by two-dimensional electronic spectroscopy
Bixner, O., Christensson, N., Hauer, J., Milota, F., Mančal, T., Lukeš, V., Kauffmann, H.F.
@EPJ Web of Conferences
- 2013|
Vibronic and Vibrational Coherences in Two-Dimensional Electronic Spectra of Supramolecular J-Aggregates
Milota, Franz, Prokhorenko, Valentyn I., Mancal, Tomas, von Berlepsch, Hans, Bixner, Oliver, Kauffmann, Harald F., Hauer, Juergen
@Journal of Physical Chemistry a
DOI: 10.1021/jp3119605
- 2012|
Excitation dynamics and relaxation in a molecular heterodimer
Balevicius, V., Jr., Gelzinis, A., Abramavicius, D., Mancal, T., Valkunas, L.
@Chemical Physics
- 2012|
Origin of Long-Lived Coherences in Light-Harvesting Complexes
Christensson, Niklas, Kauffmann, Harald F., Pullerits, Tonu, Mancal, Tomas
@Journal of Physical Chemistry B
DOI: 10.1021/jp304649c
- 2012|
Parametric projection operator technique for second order non-linear response
- 2012|
Quantum master equations for non-linear optical response of molecular systems
- 2012|
System-Dependent Signatures of Electronic and Vibrational Coherences in Electronic Two-Dimensional Spectra
Mancal, Tomas, Christensson, Niklas, Lukes, Vladimir, Milota, Franz, Bixner, Oliver, Kauffmann, Harald F., Hauer, Juergen
@Journal of Physical Chemistry Letters
DOI: 10.1021/jz300362k
- 2012|
Two-Dimensional Electronic Spectroscopy Reveals Ultrafast Energy Diffusion in Chlorosomes
Dostal, Jakub, Mancal, Tomas, Augulis, Ramunas, Vacha, Frantisek, Psencik, Jakub, Zigmantas, Donatas
@Journal of the American Chemical Society
DOI: 10.1021/ja3025627
- 2012|
Two-dimensional electronic spectroscopy for vibrational wavepacket analysis and electronic structure determination
Christensson, N., Mancal, T., Milota, F., Bixner, O., Kauffmann, H.F., Hauer, J.
@International Conference on Ultrafast Structural Dynamics, ICUSD 2012
- 2012|
Two-dimensional optical spectroscopy of charge transfer
Mančal, T., Christensson, N., Bixner, O., Lukeš, V., Milota, F., Kauffmann, H., Hauer, J.
@International Conference on Ultrafast Structural Dynamics, ICUSD 2012
- 2012|
Ultrafast photo-induced charge transfer unveiled by two-dimensional electronic spectroscopy
Bixner, Oliver, Lukes, Vladimir, Mancal, Tomas, Hauer, Juergen, Milota, Franz, Fischer, Michael, Pugliesi, Igor, Bradler, Maximilian, Schmid, Walther, Riedle, Eberhard, Kauffmann, Harald F., Christensson, Niklas
@Journal of Chemical Physics
DOI: 10.1063/1.4720492
- 2011|
Decoherence in Weakly Coupled Excitonic Complexes
Mancal, Tomas, Balevicius, Vytautas, Jr., Valkunas, Leonas
@Journal of Physical Chemistry a
DOI: 10.1021/jp108247a
- 2011|
Dynamics of quantum wave packets in complex molecules traced by 2D coherent electronic correlation spectroscopy
Manĉal, T., Bixner, O., Christensson, N., Hauer, J., Milota, F., Nemeth, A., Sperling, J., Kauffmann, H.F.
@Procedia Chemistry
- 2010|
Double-quantum two-dimensional electronic spectroscopy of a three-level system: Experiments and simulations
Nemeth, Alexandra, Milota, Franz, Mancal, Tomas, Pullerits, Tonu, Sperling, Jaroslaw, Hauer, Juergen, Kauffmann, Harald F., Christensson, Niklas
@Journal of Chemical Physics
DOI: 10.1063/1.3474995
- 2010|
Electronic coherence dephasing in excitonic molecular complexes: Role of Markov and secular approximations
- 2010|
Exciton dynamics in photosynthetic complexes: excitation by coherent and incoherent light
- 2010|
Towards understanding the role of coherent dynamics in natural light-harvesting
Olšina, J., Šanda, F., Mančal, T.
@Optics InfoBase Conference Papers
- 2010|
Vibrational wave packet induced oscillations in two-dimensional electronic spectra. I. Experiments
Nemeth, Alexandra, Milota, Franz, Mancal, Tomas, Lukes, Vladimir, Hauer, Juergen, Kauffmann, Harald F., Sperling, Jaroslaw
@Journal of Chemical Physics
DOI: 10.1063/1.3404404
- 2010|
Vibrational wave packet induced oscillations in two-dimensional electronic spectra. II. Theory
Mancal, Tomas, Nemeth, Alexandra, Milota, Franz, Lukes, Vladimir, Kauffmann, Harald F., Sperling, Jaroslaw
@Journal of Chemical Physics
DOI: 10.1063/1.3404405
- 2010|
Visible two-dimensional spectroscopy with sub-7 fs pulses uncovers ultrafast electron-phonon coupling dynamics
Milota, F., Mančal, T., Lukeš, V., Nemeth, A., Sperling, J., Kauffmann, H.F., Hauer, J.
@Optics InfoBase Conference Papers
DOI: 10.1364/up.2010.wb3
- 2009|
Two-Dimensional Electronic Spectroscopy of Molecular Excitons
Milota, Franz, Sperling, Jaroslaw, Nemeth, Alexandra, Mancal, Tomas, Kauffmann, Harald F.
@Accounts of Chemical Research
DOI: 10.1021/ar800282e
- 2009|
Two-dimensional electronic spectra of an aggregating dye: simultaneous measurement of monomeric and dimeric line-shapes
Nemeth, Alexandra, Lukes, Vladimir, Sperling, Jaroslaw, Milota, Franz, Kauffmann, Harald F., Mancal, Tomas
@Physical Chemistry Chemical Physics
DOI: 10.1039/b902477h
- 2009|
Vibrational Beating in Two-Dimensional Electronic Spectra
Nemeth, A., Milota, F., Mančal, T., Lukeš, V., Kauffmann, H.F., Sperling, J.
@Springer Series in Chemical Physics
- 2008|
Electronic coherence transfer in photosynthetic complexes and its signatures in optical spectroscopy
Mancal, Tomas, Valkunas, Leonas, Rea, Elizabeth L., Engel, Gregory S., Calhoun, Tessa R., Fleming, Graham R.
@Spectroscopy-an International Journal
- 2008|
Electronic coherence transfer in photosynthetic complexes and its signatures in optical spectroscopy
Mančal, T., Valkunas, L., Read, E.L., Engel, G.S., Calhoun, T.R., Fleming, G.R.
@Spectroscopy
DOI: 10.1155/2008/714573
- 2008|
Vibronic modulation of lineshapes in two-dimensional electronic spectra
Nemeth, Alexandra, Milota, Franz, Mancal, Tomas, Lukes, Vladimir, Kauffmann, Harald F., Sperling, Jaroslaw
@Chemical Physics Letters
- 2007|
Cross-peak-specific two-dimensional electronic spectroscopy
Read, Elizabeth L., Engel, Gregory S., Calhoun, Tessa R., Mancal, Tomas, Ahn, Tae Kyu, Blankenship, Robert E., Fleming, Graham R.
@Proceedings of the National Academy of Sciences of the United States of America
- 2007|
Evidence for wavelike energy transfer through quantum coherence in photosynthetic systems
Engel, Gregory S., Calhoun, Tessa R., Read, Elizabeth L., Ahn, Tae-Kyu, Mancal, Tomas, Cheng, Yuan-Chung, Blankenship, Robert E., Fleming, Graham R.
@Nature
DOI: 10.1038/nature05678
- 2007|
Two dimensional Fourier transform electronic spectroscopy: Evolution of cross peaks in the Fenna-Matthews-Olson complex
Engel, G.S., Read, E.L., Calhoun, T.R., Ahn, T.K., Mančál, T., Blankenship, R.E., Fleming, G.R.
@Springer Series in Chemical Physics
- 2007|
Two-dimensional optical spectroscopy of multi-chromophore protein complexes
Fleming, G.R., Zigmantas, D., Read, E., Mančal, T., Engel, G.
@Springer Series in Chemical Physics
- 2006|
2D electronic spectroscopy of the B800-B820 LH3 light-harvesting complex
Zigmantas, D., Read, E.L., Mančal, T.A.C., Brixner, T., Gardiner, A.T., Fleming, G.R.
@Femtochemistry VII
- 2006|
2D fourier transform electronic spectroscopy of photosynthetic reaction centers: Mapping coupling in the B band
Engel, G.S., Calhoun, T.R., Zigamantas, D., Mancal, T., Lee, H., Fleming, G.R.
@Optics InfoBase Conference Papers
- 2006|
Theory of exciton-charge transfer state coupled systems
Mancal, Tomas, Valkunas, Leonas, Fleming, Graham R.
@Chemical Physics Letters
- 2006|
Two dimensional optical spectroscopy of multi-chromophore protein complexes
Fleming, G.R., Zigmantas, D., Read, E.L., Mančal, T., Brixner, T., Gardiner, A.T.
@Optics InfoBase Conference Papers
DOI: 10.1364/up.2006.tua1
- 2006|
Two-dimensional electronic spectroscopy of the B800-B820 light-harvesting complex
Zigmantas, Donatas, Read, Elizabeth L., Mancal, Tomas, Brixner, Tobias, Gardiner, Alastair T., Cogdell, Richard J., Fleming, Graham R.
@Proceedings of the National Academy of Sciences of the United States of America
- 2006|
Two-dimensional optical three-pulse photon echo spectroscopy. I. Nonperturbative approach to the calculation of spectra
- 2006|
Two-dimensional optical three-pulse photon echo spectroscopy. II. Signatures of coherent electronic motion and exciton population transfer in dimer two-dimensional spectra
Pisliakov, Andrei V., Mancal, Tomas, Fleming, Graham R.
@Journal of Chemical Physics
DOI: 10.1063/1.2200705
- 2004|
Phase-stabilized two-dimensional electronic spectroscopy
Brixner, T, Mancal, T, Stiopkin, IV, Fleming, GR
@Journal of Chemical Physics
DOI: 10.1063/1.1776112
- 2004|
Probing electronic coupling in excitonically coupled heterodimer complexes by two-color three-pulse photon echoes
- 2002|
Femtosecond laser pulse control of electron transfer processes
- 2002|
Optimal control theory of ultrafast molecular dynamics: are the results of interest for the experiment?
- 2002|
Phonon mode cooperating with a particle serving as a Maxwell gate and rectifier
- 2001|
Interplay of non-Markovian relaxation and ultrafast optical state preparation in molecular systems: The Laguerre polynomial method
Mancal, T, May, V
@Journal of Chemical Physics
- 2001|
Interplay of non-Markovian relaxation and ultrafast optical state preparation in molecular systems: the Laguerre polynomial method
- 2001|
Laser pulse control of ultrafast electron transfer reactions
- 2001|
Non-Markovian dissipation of molecular vibrational energy via multi-quantum processes
- 2001|
Retardation effects in the dynamics of open molecular systems
- 2000|
Non-Markovian relaxation in an open quantum system - Polynomial approach to the solution of the quantum master equation
- 1999|
Isothermal Maxwell daemon as a molecular rectifier
- 1998|
Non-perturbative solution of GME
- 1998|
Short time de-excitation dynamics of a two-level electrons system. Non-perturbative solution of the master equation
Mancal, T, Bok, J, Skala, L
@Journal of Physics a-Mathematical and General